Variant report

Variant	rs9292615
Chromosome Location	chr5:35839893-35839894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1494565	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1845482	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2885272	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4370302	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4466190	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4482926	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56082154	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62355266	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6891427	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7709291	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35837200-35840800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:35839000-35840000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr5:35839000-35840000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr5:35839000-35840000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr5:35839000-35840000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr5:35839000-35840200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr5:35839000-35840600	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr5:35839000-35841800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr5:35839000-35842000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr5:35839600-35840200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr5:35839600-35841000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr5:35839800-35841000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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