Variant report

Variant	rs987106
Chromosome Location	chr5:35875593-35875594
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10063294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10213865	0.88[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs11567694	0.88[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs11567705	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs11742240	0.94[JPT][hapmap]
rs1494565	0.87[AMR][1000 genomes]
rs1845482	0.80[AMR][1000 genomes]
rs2885272	0.81[AMR][1000 genomes]
rs4370302	0.87[AMR][1000 genomes]
rs6881270	0.94[JPT][hapmap]
rs6881706	0.94[JPT][hapmap]
rs6890853	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs6891427	0.87[AMR][1000 genomes]
rs7717955	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs987106	LMBRD2	cis	parietal	SCAN

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35860000-35876600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:35860400-35883800	Weak transcription	Small Intestine	intestine
3	chr5:35862600-35876200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:35863800-35876200	Weak transcription	NHDF-Ad	bronchial
5	chr5:35864600-35876600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr5:35866200-35878400	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr5:35866600-35878800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr5:35866600-35882000	Genic enhancers	Dnd41	blood
9	chr5:35867600-35878000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr5:35867800-35876400	Strong transcription	NHLF	lung
11	chr5:35867800-35879800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr5:35868200-35876000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr5:35869200-35876600	Weak transcription	HMEC	breast
14	chr5:35869400-35876600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr5:35870000-35876200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr5:35870400-35875800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr5:35870400-35876200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr5:35870600-35878200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr5:35871000-35875800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:35871000-35875800	Weak transcription	Lung	lung
21	chr5:35873200-35876400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
22	chr5:35873200-35880200	Genic enhancers	Primary T cells from cord blood	blood
23	chr5:35873200-35880200	Genic enhancers	Thymus	Thymus
24	chr5:35873400-35880000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
25	chr5:35873600-35876400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr5:35873600-35878000	Genic enhancers	Primary T cells fromperipheralblood	blood
27	chr5:35874400-35876600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr5:35874400-35878400	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr5:35874600-35875600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr5:35875200-35876400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr5:35875400-35876600	Strong transcription	Osteobl	bone
32	chr5:35875400-35878000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr5:35875400-35878200	Strong transcription	HSMM	muscle
34	chr5:35875400-35883200	Genic enhancers	Fetal Thymus	thymus

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