Variant report

Variant	rs11747113
Chromosome Location	chr5:151418515-151418516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11167567	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11167569	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12518066	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12520609	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12522075	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12523233	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1319741	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17112437	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56094864	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62394584	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62394585	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62394590	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62394606	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62394607	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6884763	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020899	chr5:151412785-151516788	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151417800-151419400	Enhancers	Primary T cells fromperipheralblood	blood
2	chr5:151417800-151419400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr5:151417800-151419400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr5:151417800-151419400	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr5:151417800-151419600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr5:151417800-151419800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr5:151417800-151419800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr5:151417800-151420000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr5:151418000-151419200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:151418000-151419400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr5:151418000-151419800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr5:151418200-151419600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr5:151418400-151418800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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