Variant report

Variant	rs62394607
Chromosome Location	chr5:151432146-151432147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11167567	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11167569	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11747113	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12518066	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12520609	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12522075	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12523233	0.97[ASN][1000 genomes]
rs1319741	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17112437	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56094864	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62394584	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62394585	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62394590	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62394606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6884763	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020899	chr5:151412785-151516788	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv526375	chr5:151423814-151438217	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151431000-151432400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:151431000-151432400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:151431200-151432400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:151431400-151432200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:151431400-151432400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr5:151431400-151432400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:151431400-151432600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:151431400-151432800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:151431400-151432800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:151431400-151433000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:151431600-151432200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr5:151431800-151432200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr5:151431800-151432200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr5:151431800-151432200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr5:151431800-151432400	Enhancers	H9 Cell Line	embryonic stem cell
16	chr5:151431800-151432400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr5:151431800-151432400	Enhancers	Adipose Nuclei	Adipose
18	chr5:151432000-151432400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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