Variant report

Variant	rs11747996
Chromosome Location	chr5:167484540-167484541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11134486	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11741090	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11750851	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17069703	0.89[CHB][hapmap]
rs17069724	1.00[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3860783	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4588609	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55755459	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67610852	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73377369	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs750732	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7714553	0.89[CHB][hapmap]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167468000-167500800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:167474400-167485000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:167474600-167491400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:167475000-167484800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:167475000-167491800	Weak transcription	NH-A	brain
6	chr5:167475400-167489200	Weak transcription	HSMM	muscle
7	chr5:167477800-167489200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:167478000-167489000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:167479200-167484800	Weak transcription	NHEK	skin
10	chr5:167483200-167486200	Weak transcription	Fetal Lung	lung
11	chr5:167483200-167489400	Weak transcription	Left Ventricle	heart
12	chr5:167483200-167502400	Weak transcription	Fetal Heart	heart
13	chr5:167484200-167485600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:167484200-167485600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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