Variant report

Variant	rs7714553
Chromosome Location	chr5:167466119-167466120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10516039	0.84[CEU][hapmap]
rs11134486	0.89[CHB][hapmap]
rs11747996	0.89[CHB][hapmap]
rs1432820	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[CHD][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17069617	0.84[CEU][hapmap]
rs17069703	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17069724	0.89[CHB][hapmap]
rs247992	0.84[ASN][1000 genomes]
rs247993	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs3860783	0.89[CHB][hapmap]
rs4588609	0.89[CHB][hapmap]
rs67926229	0.99[ASN][1000 genomes]
rs6863895	0.84[CEU][hapmap]
rs6882264	0.84[CEU][hapmap]
rs6896795	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs6897051	0.80[CHB][hapmap]
rs750732	0.88[CHB][hapmap]
rs889066	0.84[CEU][hapmap]
rs9764066	0.84[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7714553	FBXW11	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167447600-167483000	Weak transcription	Right Atrium	heart
2	chr5:167450600-167466600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:167450800-167474000	Weak transcription	Left Ventricle	heart
4	chr5:167455200-167474600	Weak transcription	NHEK	skin
5	chr5:167457400-167469000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:167458200-167474200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:167463800-167470800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:167465400-167469000	Weak transcription	Right Ventricle	heart
9	chr5:167465400-167473000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:167465800-167470200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:167466000-167466200	Bivalent Enhancer	Fetal Brain Female	brain
12	chr5:167466000-167466400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:167466000-167466400	Enhancers	Fetal Brain Male	brain
14	chr5:167466000-167466600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr5:167466000-167466600	Active TSS	Brain Anterior Caudate	brain
16	chr5:167466000-167467000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links