Variant report

Variant	rs889066
Chromosome Location	chr5:167457553-167457554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10516039	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11948431	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs11950941	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12153623	1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1432820	0.83[CEU][hapmap]
rs17069520	0.95[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs17069547	0.93[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17069582	1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs17069585	1.00[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs17069617	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs17069662	0.87[JPT][hapmap]
rs2617958	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2617979	0.85[JPT][hapmap]
rs56117649	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56379512	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57271872	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58243181	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58485045	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66943039	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67727213	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6863895	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6882264	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72824974	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73375658	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs754925	0.95[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7714553	0.84[CEU][hapmap]
rs9764066	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167443800-167466000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:167447600-167483000	Weak transcription	Right Atrium	heart
3	chr5:167450600-167457600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:167450600-167466600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:167450800-167474000	Weak transcription	Left Ventricle	heart
6	chr5:167454600-167463000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:167455200-167474600	Weak transcription	NHEK	skin
8	chr5:167456600-167457800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:167456800-167457600	Weak transcription	Right Ventricle	heart
10	chr5:167457000-167458000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:167457400-167458200	Enhancers	Esophagus	oesophagus
12	chr5:167457400-167469000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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