Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10516039	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11948431	0.89[EUR][1000 genomes]
rs11950941	0.90[ASN][1000 genomes]
rs12153623	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17069520	0.94[ASN][1000 genomes]
rs17069547	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17069582	0.87[ASN][1000 genomes]
rs17069585	0.87[ASN][1000 genomes]
rs17069617	0.81[ASN][1000 genomes]
rs2617958	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2617979	0.97[ASN][1000 genomes]
rs56117649	0.87[ASN][1000 genomes]
rs56379512	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57271872	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58243181	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58485045	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67727213	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6863895	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6882264	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72824974	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73375658	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs754925	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs889066	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9764066	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167391600-167410200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:167397200-167420800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:167405400-167412600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:167407000-167410400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:167408000-167419800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:167408200-167413400	Weak transcription	Left Ventricle	heart
7	chr5:167408200-167419800	Weak transcription	NHEK	skin
8	chr5:167408400-167413200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:167408400-167418400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr5:167408400-167419200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:167409400-167409800	Enhancers	Right Ventricle	heart

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