Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10516039	0.88[ASN][1000 genomes]
rs12153623	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17069520	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17069547	0.99[ASN][1000 genomes]
rs17069582	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17069585	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17069617	0.91[ASN][1000 genomes]
rs2617958	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2617979	0.89[ASN][1000 genomes]
rs56117649	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56379512	0.99[ASN][1000 genomes]
rs57271872	0.96[ASN][1000 genomes]
rs58243181	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58485045	0.91[ASN][1000 genomes]
rs66943039	0.90[ASN][1000 genomes]
rs67727213	0.99[ASN][1000 genomes]
rs6863895	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6882264	0.93[ASN][1000 genomes]
rs72824974	0.94[ASN][1000 genomes]
rs73375658	0.99[ASN][1000 genomes]
rs754925	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs889066	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9764066	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167423400-167455400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167432400-167442400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:167432600-167442000	Weak transcription	NHEK	skin
4	chr5:167434200-167442200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:167434800-167447600	Weak transcription	NH-A	brain
6	chr5:167437000-167441800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:167437200-167444000	Weak transcription	Left Ventricle	heart
8	chr5:167438000-167448200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:167438400-167443600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr5:167439400-167442200	Weak transcription	HSMM	muscle
11	chr5:167440000-167443600	Weak transcription	Right Ventricle	heart
12	chr5:167440600-167441800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:167440800-167442600	Enhancers	Fetal Brain Male	brain
14	chr5:167441400-167442000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:167441400-167444600	Weak transcription	Right Atrium	heart
16	chr5:167441600-167442000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:167441600-167442000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:167441600-167442000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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