Variant report

Variant	rs67727213
Chromosome Location	chr5:167429060-167429061
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167426744..167429532-chr5:167429967..167431982,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10516039	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11948431	0.91[EUR][1000 genomes]
rs11950941	0.99[ASN][1000 genomes]
rs12153623	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17069520	0.90[ASN][1000 genomes]
rs17069547	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17069582	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17069585	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17069617	0.90[ASN][1000 genomes]
rs2617958	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2617979	0.88[ASN][1000 genomes]
rs56117649	0.96[ASN][1000 genomes]
rs56379512	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57271872	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58243181	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58485045	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66943039	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6863895	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6882264	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72824974	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73375658	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs754925	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs889066	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9764066	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167413800-167432000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:167423400-167440600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:167423400-167455400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:167423600-167429200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:167423800-167432000	Weak transcription	HMEC	breast
6	chr5:167427000-167434400	Weak transcription	Left Ventricle	heart
7	chr5:167427800-167430200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:167428000-167429400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:167428000-167429400	Enhancers	Brain Cingulate Gyrus	brain
10	chr5:167428200-167430200	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr5:167428200-167432800	Weak transcription	Brain Angular Gyrus	brain
12	chr5:167428400-167429200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:167428400-167429200	Weak transcription	Brain Hippocampus Middle	brain
14	chr5:167428400-167430000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:167428400-167432400	Weak transcription	Right Ventricle	heart
16	chr5:167428400-167433200	Weak transcription	HSMM	muscle
17	chr5:167428600-167429200	Weak transcription	NHEK	skin
18	chr5:167428600-167433200	Weak transcription	Ovary	ovary
19	chr5:167428800-167429600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:167429000-167437600	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links