Variant report

Variant	rs17069617
Chromosome Location	chr5:167444365-167444366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167433427..167437109-chr5:167443043..167445741,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10516039	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs11948431	0.92[CEU][hapmap]
rs11950941	0.91[ASN][1000 genomes]
rs12153623	1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs1432820	0.83[CEU][hapmap]
rs17069520	0.95[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs17069547	0.92[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs17069582	1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs17069585	1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs17069662	0.87[JPT][hapmap]
rs2617958	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.87[ASN][1000 genomes]
rs2617979	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs56117649	0.94[ASN][1000 genomes]
rs56379512	0.90[ASN][1000 genomes]
rs57271872	0.92[ASN][1000 genomes]
rs58243181	0.87[ASN][1000 genomes]
rs58485045	0.87[ASN][1000 genomes]
rs66943039	0.81[ASN][1000 genomes]
rs67727213	0.90[ASN][1000 genomes]
rs6863895	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs6882264	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs72824974	0.91[ASN][1000 genomes]
rs73375658	0.90[ASN][1000 genomes]
rs754925	0.95[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs7714553	0.84[CEU][hapmap]
rs889066	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs9764066	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167423400-167455400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167434800-167447600	Weak transcription	NH-A	brain
3	chr5:167438000-167448200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:167441400-167444600	Weak transcription	Right Atrium	heart
5	chr5:167441800-167446400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:167442600-167444600	Strong transcription	NHEK	skin
7	chr5:167442600-167446000	Weak transcription	Fetal Brain Male	brain
8	chr5:167443000-167444600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:167443000-167449200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:167443200-167447400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:167443200-167452000	Weak transcription	HSMM	muscle
12	chr5:167443600-167444800	Enhancers	Right Ventricle	heart
13	chr5:167443800-167466000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:167444000-167444800	Enhancers	Left Ventricle	heart
15	chr5:167444000-167449600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:167444200-167447000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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