Variant report

Variant	rs754925
Chromosome Location	chr5:167432979-167432980
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10516039	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11948431	0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs11950941	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12153623	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17069520	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17069547	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17069582	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17069585	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17069617	0.95[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs17069662	1.00[JPT][hapmap]
rs2546960	0.81[CHB][hapmap]
rs2617958	0.95[CHB][hapmap];0.87[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2617979	0.90[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs56117649	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56379512	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57271872	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58243181	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58485045	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs66943039	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs67727213	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6863895	0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6882264	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72824974	0.95[ASN][1000 genomes]
rs73375658	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs889066	0.95[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9764066	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167423400-167440600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:167423400-167455400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:167427000-167434400	Weak transcription	Left Ventricle	heart
4	chr5:167428400-167433200	Weak transcription	HSMM	muscle
5	chr5:167428600-167433200	Weak transcription	Ovary	ovary
6	chr5:167429000-167437600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr5:167429400-167433000	Weak transcription	Brain Hippocampus Middle	brain
8	chr5:167429400-167433200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr5:167430800-167433000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:167431800-167433600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:167432200-167434200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:167432400-167433000	Enhancers	Right Ventricle	heart
13	chr5:167432400-167442400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:167432600-167436400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:167432600-167442000	Weak transcription	NHEK	skin
16	chr5:167432800-167433400	Enhancers	Brain Angular Gyrus	brain
17	chr5:167432800-167440800	Weak transcription	Fetal Brain Male	brain

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