Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167426744..167429532-chr5:167429967..167431982,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10516039	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11948431	0.91[EUR][1000 genomes]
rs11950941	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12153623	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17069520	0.90[ASN][1000 genomes]
rs17069547	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17069582	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17069585	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17069617	0.87[ASN][1000 genomes]
rs2617958	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2617979	0.81[ASN][1000 genomes]
rs56117649	0.93[ASN][1000 genomes]
rs56379512	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57271872	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58485045	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66943039	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67727213	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6863895	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6882264	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72824974	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73375658	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs754925	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs889066	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9764066	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167413800-167432000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:167423400-167440600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:167423400-167455400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:167423800-167432000	Weak transcription	HMEC	breast
5	chr5:167427000-167434400	Weak transcription	Left Ventricle	heart
6	chr5:167428200-167432800	Weak transcription	Brain Angular Gyrus	brain
7	chr5:167428400-167432400	Weak transcription	Right Ventricle	heart
8	chr5:167428400-167433200	Weak transcription	HSMM	muscle
9	chr5:167428600-167433200	Weak transcription	Ovary	ovary
10	chr5:167429000-167437600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:167429400-167433000	Weak transcription	Brain Hippocampus Middle	brain
12	chr5:167429400-167433200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr5:167429600-167432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:167430000-167432200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:167430200-167431800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:167430800-167433000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:167431000-167432600	Enhancers	NHEK	skin
18	chr5:167431200-167432600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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