Variant report

Variant	rs1432820
Chromosome Location	chr5:167470410-167470411
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10516039	0.83[CEU][hapmap]
rs17069617	0.83[CEU][hapmap]
rs17069703	0.89[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs247992	0.91[ASN][1000 genomes]
rs247993	0.89[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs67926229	0.86[ASN][1000 genomes]
rs6863895	0.83[CEU][hapmap]
rs6882264	0.83[CEU][hapmap]
rs6896795	0.84[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs6897051	0.90[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs7714553	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[CHD][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs889066	0.83[CEU][hapmap]
rs9764066	0.83[CEU][hapmap]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167447600-167483000	Weak transcription	Right Atrium	heart
2	chr5:167450800-167474000	Weak transcription	Left Ventricle	heart
3	chr5:167455200-167474600	Weak transcription	NHEK	skin
4	chr5:167458200-167474200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:167463800-167470800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:167465400-167473000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:167467000-167473200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:167467200-167474000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:167468000-167500800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:167469400-167473200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:167470200-167473200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:167470200-167474000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr5:167470200-167479800	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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