Variant report

Variant	rs11748177
Chromosome Location	chr5:41610385-41610386
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13174576	0.91[ASN][1000 genomes]
rs16871620	1.00[ASN][1000 genomes]
rs16871673	0.83[EUR][1000 genomes]
rs316721	0.91[ASN][1000 genomes]
rs4443464	0.91[ASN][1000 genomes]
rs589564	0.82[EUR][1000 genomes]
rs598318	0.81[EUR][1000 genomes]
rs634858	0.81[EUR][1000 genomes]
rs651256	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs659547	0.81[EUR][1000 genomes]
rs661845	0.81[EUR][1000 genomes]
rs664228	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs664634	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs664680	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs665157	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs677450	0.81[EUR][1000 genomes]
rs677610	0.80[EUR][1000 genomes]
rs677997	0.81[EUR][1000 genomes]
rs681400	0.80[EUR][1000 genomes]
rs6869561	0.81[EUR][1000 genomes]
rs6885560	0.83[EUR][1000 genomes]
rs6888718	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881563	chr5:41560079-41616100	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41609600-41610400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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