Variant report

Variant	rs16871620
Chromosome Location	chr5:41610536-41610537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10075064	1.00[JPT][hapmap]
rs10941557	1.00[JPT][hapmap]
rs11748177	1.00[ASN][1000 genomes]
rs13174576	0.91[ASN][1000 genomes]
rs316721	0.91[ASN][1000 genomes]
rs3901707	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4443464	0.91[ASN][1000 genomes]
rs4957422	1.00[JPT][hapmap]
rs4957423	1.00[JPT][hapmap]
rs677610	1.00[CEU][hapmap]
rs6888332	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6890446	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881563	chr5:41560079-41616100	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41610400-41610800	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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