Variant report

Variant	rs11749269
Chromosome Location	chr5:54019772-54019773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:54018088..54021349-chr5:54022983..54028263,5	K562	blood:
2	chr5:53813485..53816212-chr5:54019174..54021024,2	MCF-7	breast:
3	chr5:54017504..54021673-chr5:54022029..54028384,8	K562	blood:

Variant related genes	Relation type
ENSG00000178996	Chromatin interaction

rs_ID	r²[population]
rs10036814	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11745111	0.82[CEU][hapmap]
rs1562230	0.85[ASN][1000 genomes]
rs1562231	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35660559	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6889854	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs985444	0.84[ASN][1000 genomes]

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54013200-54020800	Enhancers	Fetal Heart	heart
2	chr5:54014600-54023000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr5:54015800-54021600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:54016000-54021400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:54016000-54022000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr5:54016400-54021800	Weak transcription	HSMMtube	muscle
7	chr5:54016600-54021600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:54016800-54021400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:54016800-54021600	Weak transcription	NH-A	brain
10	chr5:54016800-54021600	Weak transcription	NHLF	lung
11	chr5:54017000-54038000	Weak transcription	Aorta	Aorta
12	chr5:54017600-54021600	Weak transcription	Fetal Brain Male	brain
13	chr5:54018600-54021600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:54018800-54021600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:54019000-54021600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:54019200-54021400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:54019200-54021400	Weak transcription	NHDF-Ad	bronchial
18	chr5:54019200-54021600	Weak transcription	Osteobl	bone
19	chr5:54019400-54021600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr5:54019400-54023800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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