Variant report

Variant	rs1562231
Chromosome Location	chr5:54004735-54004736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11749269	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1562230	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6889854	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs985444	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:53999800-54009400	Weak transcription	Aorta	Aorta
2	chr5:53999800-54009600	Weak transcription	Right Atrium	heart
3	chr5:54000000-54005000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:54000000-54005000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:54000200-54005600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:54002600-54005000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:54002600-54009600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:54003200-54009400	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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