Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10035329	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10040959	0.89[YRI][hapmap]
rs10056059	0.81[ASN][1000 genomes]
rs10063845	0.85[YRI][hapmap]
rs10900651	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs13362578	0.81[ASN][1000 genomes]
rs17161607	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17450338	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17450387	0.84[YRI][hapmap]
rs17473391	0.81[YRI][hapmap]
rs17534846	0.91[EUR][1000 genomes]
rs2195944	0.84[YRI][hapmap]
rs28433735	0.81[ASN][1000 genomes]
rs59616337	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72796568	0.81[ASN][1000 genomes]
rs72796571	0.81[ASN][1000 genomes]
rs7709466	0.81[ASN][1000 genomes]
rs7709482	0.81[ASN][1000 genomes]
rs7724901	0.84[ASN][1000 genomes]
rs7729990	0.84[ASN][1000 genomes]
rs9326758	0.88[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs9326759	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv2756048	chr5:108448101-108542101	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108468800-108521800	Weak transcription	Aorta	Aorta
2	chr5:108476000-108519200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:108476200-108506800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:108481600-108535000	Weak transcription	Left Ventricle	heart
5	chr5:108495200-108506200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:108496000-108532800	Weak transcription	Ovary	ovary
7	chr5:108496200-108501600	Weak transcription	Psoas Muscle	Psoas
8	chr5:108497600-108508800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:108497800-108517400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:108498800-108500000	Weak transcription	GM12878-XiMat	blood
11	chr5:108498800-108512600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:108499000-108513200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:108499200-108500000	Weak transcription	HSMM	muscle
14	chr5:108499200-108500200	Enhancers	Primary B cells from peripheral blood	blood
15	chr5:108499600-108500000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr5:108499800-108500200	Enhancers	HSMMtube	muscle

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