Variant report

Variant	rs7724901
Chromosome Location	chr5:108436510-108436511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108432296..108433865-chr5:108435051..108437891,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10035329	0.90[ASN][1000 genomes]
rs10036203	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10056059	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10063768	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10074425	0.81[AFR][1000 genomes]
rs10076453	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10477951	0.80[EUR][1000 genomes]
rs10900651	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11749630	0.84[ASN][1000 genomes]
rs11957989	0.81[EUR][1000 genomes]
rs12332736	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13362578	0.96[ASN][1000 genomes]
rs17161607	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17450338	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17534846	0.89[ASN][1000 genomes]
rs28433735	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3797843	0.82[AMR][1000 genomes]
rs3797845	0.80[AMR][1000 genomes]
rs55699307	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58724822	0.95[ASN][1000 genomes]
rs59616337	0.90[ASN][1000 genomes]
rs67436896	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6882531	0.82[AFR][1000 genomes]
rs72796568	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72796571	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7709466	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7709482	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7729990	0.96[ASN][1000 genomes]
rs7731193	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs972278	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv882692	chr5:108391660-108474166	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108410400-108441200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:108416400-108441200	Weak transcription	HSMM	muscle
3	chr5:108422800-108444800	Weak transcription	Left Ventricle	heart
4	chr5:108426000-108441400	Weak transcription	Aorta	Aorta
5	chr5:108427400-108441200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:108427400-108441400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:108433400-108441400	Weak transcription	Fetal Heart	heart
8	chr5:108435200-108437800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:108435200-108437800	Weak transcription	NHDF-Ad	bronchial
10	chr5:108435600-108446800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr5:108436200-108437000	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr5:108436400-108441400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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