Variant report

Variant	rs67436896
Chromosome Location	chr5:108441853-108441854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108441092..108442647-chr5:108444693..108446908,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10036203	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10056059	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10063768	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10074425	0.84[AFR][1000 genomes]
rs10076453	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1036214	0.80[EUR][1000 genomes]
rs10477951	0.81[EUR][1000 genomes]
rs10900651	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11957989	0.81[EUR][1000 genomes]
rs12332736	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13362578	0.87[ASN][1000 genomes]
rs17161607	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17450338	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17534846	0.87[ASN][1000 genomes]
rs28433735	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4957797	0.82[AMR][1000 genomes]
rs55699307	0.81[AMR][1000 genomes]
rs58724822	0.86[ASN][1000 genomes]
rs6882531	0.85[AFR][1000 genomes]
rs72796568	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72796571	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7709466	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7709482	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7724901	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7729990	0.84[ASN][1000 genomes]
rs7731193	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7736773	0.80[EUR][1000 genomes]
rs9326758	0.92[ASN][1000 genomes]
rs972278	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv882692	chr5:108391660-108474166	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108422800-108444800	Weak transcription	Left Ventricle	heart
2	chr5:108435600-108446800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:108438800-108442200	Weak transcription	HepG2	liver
4	chr5:108441200-108442000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:108441200-108442000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:108441200-108442000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:108441200-108442000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:108441200-108442000	Enhancers	Brain Anterior Caudate	brain
9	chr5:108441200-108442000	Enhancers	HMEC	breast
10	chr5:108441200-108442000	Flanking Active TSS	NHDF-Ad	bronchial
11	chr5:108441200-108442000	Enhancers	NHEK	skin
12	chr5:108441200-108442200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr5:108441200-108442200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:108441200-108442400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr5:108441200-108442600	Enhancers	HSMMtube	muscle
16	chr5:108441200-108442800	Enhancers	HSMM	muscle
17	chr5:108441400-108442000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr5:108441400-108442000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:108441400-108442000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:108441400-108442000	Enhancers	Brain Angular Gyrus	brain
21	chr5:108441400-108442000	Enhancers	Brain Substantia Nigra	brain
22	chr5:108441400-108442000	Enhancers	Fetal Brain Female	brain
23	chr5:108441400-108442000	Enhancers	Ovary	ovary
24	chr5:108441400-108442000	Enhancers	Hela-S3	cervix
25	chr5:108441400-108442000	Flanking Active TSS	NH-A	brain
26	chr5:108441400-108442000	Flanking Active TSS	Osteobl	bone
27	chr5:108441400-108442200	Enhancers	Brain Cingulate Gyrus	brain
28	chr5:108441400-108442600	Enhancers	Brain Germinal Matrix	brain
29	chr5:108441400-108442800	Enhancers	Fetal Lung	lung
30	chr5:108441400-108445400	Enhancers	Fetal Heart	heart
31	chr5:108441600-108442000	Active TSS	Aorta	Aorta
32	chr5:108441600-108442000	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr5:108441600-108442000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr5:108441600-108442000	Enhancers	Psoas Muscle	Psoas
35	chr5:108441600-108442200	Flanking Active TSS	HUVEC	blood vessel
36	chr5:108441600-108447400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr5:108441600-108455600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr5:108441800-108442000	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr5:108441800-108442000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr5:108441800-108442000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr5:108441800-108442000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr5:108441800-108442000	Active TSS	NHLF	lung
43	chr5:108441800-108442800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr5:108441800-108455600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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