Variant report

Variant	rs4957797
Chromosome Location	chr5:108439649-108439650
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10035284	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10036203	0.96[CEU][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10040665	0.81[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10051034	0.93[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10055161	0.85[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10056059	0.81[AMR][1000 genomes]
rs10063768	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10066375	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10067445	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10069467	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10074150	0.81[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10074425	0.93[ASN][1000 genomes]
rs10076453	1.00[CEU][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10080132	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10213898	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10214383	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10214384	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1036214	0.81[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10477438	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10477439	0.87[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs10477951	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10477955	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10900651	0.88[CEU][hapmap];0.81[AMR][1000 genomes]
rs11746231	0.93[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11749629	0.87[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs11750370	0.93[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11952637	0.85[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11957989	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12332736	0.81[AMR][1000 genomes]
rs17161612	0.82[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17407717	0.83[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17450338	0.92[CEU][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17450490	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2043287	0.82[JPT][hapmap]
rs2416195	0.82[JPT][hapmap]
rs28433735	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28759518	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3797838	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs3797843	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3797845	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3814065	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4130644	0.93[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4957568	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4957569	0.85[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55699307	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67436896	0.82[AMR][1000 genomes]
rs6861626	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6865568	0.96[CEU][hapmap]
rs6869357	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6873546	0.85[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6882003	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6882531	0.87[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs6883750	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6894117	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6896724	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72796568	0.81[AMR][1000 genomes]
rs72796571	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72796593	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72796595	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72796596	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72798574	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72798576	0.88[ASN][1000 genomes]
rs7701296	0.83[EUR][1000 genomes]
rs7731193	1.00[CEU][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7736773	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9326763	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9326764	0.93[CHB][hapmap];0.81[JPT][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv882692	chr5:108391660-108474166	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108410400-108441200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:108416400-108441200	Weak transcription	HSMM	muscle
3	chr5:108422800-108444800	Weak transcription	Left Ventricle	heart
4	chr5:108426000-108441400	Weak transcription	Aorta	Aorta
5	chr5:108427400-108441200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:108427400-108441400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:108433400-108441400	Weak transcription	Fetal Heart	heart
8	chr5:108435600-108446800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr5:108436400-108441400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:108437000-108441200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:108437000-108441400	Weak transcription	Colon Smooth Muscle	Colon
12	chr5:108437000-108441400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr5:108438200-108440800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr5:108438200-108441200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:108438400-108440200	Weak transcription	NHDF-Ad	bronchial
16	chr5:108438800-108441200	Weak transcription	NHLF	lung
17	chr5:108438800-108442200	Weak transcription	HepG2	liver

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