Variant report

Variant	rs6865568
Chromosome Location	chr5:108401239-108401240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10036203	0.91[CEU][hapmap]
rs10055161	0.81[CEU][hapmap]
rs10076453	0.96[CEU][hapmap]
rs10900651	0.85[CEU][hapmap]
rs1159990	0.87[ASN][1000 genomes]
rs11952637	0.81[CEU][hapmap]
rs17450338	0.89[CEU][hapmap]
rs3797838	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4957569	0.81[CEU][hapmap]
rs4957796	0.85[JPT][hapmap]
rs4957797	0.96[CEU][hapmap]
rs6873546	0.81[CEU][hapmap]
rs73779122	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7716388	0.89[ASN][1000 genomes]
rs7731193	0.96[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv882692	chr5:108391660-108474166	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108360400-108404800	Weak transcription	Colon Smooth Muscle	Colon
2	chr5:108360400-108425200	Weak transcription	Aorta	Aorta
3	chr5:108388200-108401800	Weak transcription	Ovary	ovary
4	chr5:108388800-108412000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:108390600-108401600	Weak transcription	HSMMtube	muscle
6	chr5:108401200-108401400	Enhancers	Gastric	stomach
7	chr5:108401200-108402600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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