Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10036203	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10063768	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10076453	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1036214	0.81[CEU][hapmap]
rs10900651	0.89[CEU][hapmap]
rs1159990	0.93[JPT][hapmap];0.82[YRI][hapmap];0.90[ASN][1000 genomes]
rs11957989	0.80[EUR][1000 genomes]
rs11958509	0.81[YRI][hapmap]
rs17161612	0.81[CEU][hapmap]
rs17450338	0.85[CEU][hapmap]
rs2043287	0.92[YRI][hapmap]
rs28759518	0.82[EUR][1000 genomes]
rs3797843	0.83[EUR][1000 genomes]
rs4957797	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs55699307	0.84[EUR][1000 genomes]
rs6865568	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73779122	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7706103	0.92[YRI][hapmap]
rs7716388	0.89[ASN][1000 genomes]
rs7731193	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs892009	0.92[YRI][hapmap]
rs9326757	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv882692	chr5:108391660-108474166	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv969193	chr5:108410957-108429737	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108360400-108425200	Weak transcription	Aorta	Aorta
2	chr5:108405600-108415400	Weak transcription	Colon Smooth Muscle	Colon
3	chr5:108409600-108415400	Weak transcription	Fetal Intestine Small	intestine
4	chr5:108410200-108415400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:108410400-108441200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:108410600-108415000	Weak transcription	Fetal Heart	heart
7	chr5:108413200-108416400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr5:108413800-108415200	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr5:108414000-108415400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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