Variant report

Variant	rs72798576
Chromosome Location	chr5:108508357-108508358
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108501705..108503584-chr5:108505891..108508544,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10035284	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10036203	0.82[ASN][1000 genomes]
rs10040665	0.81[ASN][1000 genomes]
rs10051034	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10055161	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10063768	0.82[ASN][1000 genomes]
rs10066375	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10067445	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10069467	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10074150	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10074425	0.95[ASN][1000 genomes]
rs10076453	0.82[ASN][1000 genomes]
rs10080132	0.96[ASN][1000 genomes]
rs10213898	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10214383	0.95[ASN][1000 genomes]
rs10214384	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1036214	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10477438	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10477439	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477951	0.90[ASN][1000 genomes]
rs10477955	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11746231	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11749629	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11750370	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11952637	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11957989	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17161612	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17407717	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17450490	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28759518	0.90[ASN][1000 genomes]
rs3814065	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4130644	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4957568	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4957569	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4957797	0.88[ASN][1000 genomes]
rs55699307	0.86[ASN][1000 genomes]
rs6861626	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6869357	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6873546	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6882003	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6882531	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6883750	0.95[ASN][1000 genomes]
rs6894117	0.88[ASN][1000 genomes]
rs6896724	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs72796593	0.95[ASN][1000 genomes]
rs72796595	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs72796596	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs72798574	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7731193	0.82[ASN][1000 genomes]
rs7736773	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9326763	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9326764	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv2756048	chr5:108448101-108542101	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108468800-108521800	Weak transcription	Aorta	Aorta
2	chr5:108476000-108519200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:108481600-108535000	Weak transcription	Left Ventricle	heart
4	chr5:108496000-108532800	Weak transcription	Ovary	ovary
5	chr5:108497600-108508800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:108497800-108517400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:108498800-108512600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:108499000-108513200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:108500200-108527000	Weak transcription	HSMMtube	muscle
10	chr5:108501000-108521800	Weak transcription	Primary T cells from cord blood	blood
11	chr5:108502200-108522200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:108503200-108526800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:108503600-108526200	Weak transcription	Fetal Heart	heart
14	chr5:108503600-108540400	Weak transcription	Psoas Muscle	Psoas
15	chr5:108504400-108513600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr5:108504800-108511200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:108505000-108535200	Weak transcription	Pancreas	Pancrea
18	chr5:108506600-108511600	Weak transcription	Esophagus	oesophagus
19	chr5:108506600-108511800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:108507000-108510600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr5:108507200-108510600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr5:108507600-108516000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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