Variant report

Variant	rs6882531
Chromosome Location	chr5:108497950-108497951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108495412..108498266-chr5:108499945..108501590,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10035284	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10036203	1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10040665	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs10051034	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10055161	0.92[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10056059	0.87[AFR][1000 genomes]
rs10063768	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10066375	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10067445	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10069467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074150	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10074425	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10076453	0.89[CHD][hapmap];0.88[JPT][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10080132	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10213898	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10214383	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10214384	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1036214	0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10477438	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10477439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10477951	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10477955	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10900651	0.88[MKK][hapmap]
rs11746231	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11749629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11750370	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11952637	0.92[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11957989	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17161607	0.94[ASW][hapmap];0.89[LWK][hapmap];0.93[MKK][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs17161612	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17407717	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17450490	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28759518	0.91[ASN][1000 genomes]
rs3797843	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3797845	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3814065	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4130644	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4957568	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4957569	0.92[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4957797	0.87[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs55699307	0.87[ASN][1000 genomes]
rs67436896	0.85[AFR][1000 genomes]
rs6861626	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6869357	0.91[ASN][1000 genomes]
rs6873546	0.92[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6882003	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6883750	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6894117	0.89[ASN][1000 genomes]
rs6896724	0.83[ASN][1000 genomes]
rs72796568	0.81[AFR][1000 genomes]
rs72796593	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72796595	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72796596	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72798574	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72798576	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7706103	0.82[JPT][hapmap]
rs7709466	0.81[AFR][1000 genomes]
rs7709482	0.81[AFR][1000 genomes]
rs7724901	0.82[AFR][1000 genomes]
rs7731193	0.86[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.97[MKK][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7736773	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs892009	0.82[JPT][hapmap]
rs9326763	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9326764	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv2756048	chr5:108448101-108542101	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108468800-108521800	Weak transcription	Aorta	Aorta
2	chr5:108476000-108519200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:108476200-108506800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:108479000-108499800	Weak transcription	HSMMtube	muscle
5	chr5:108481600-108535000	Weak transcription	Left Ventricle	heart
6	chr5:108495200-108506200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:108496000-108532800	Weak transcription	Ovary	ovary
8	chr5:108496200-108501600	Weak transcription	Psoas Muscle	Psoas
9	chr5:108497200-108498000	Enhancers	GM12878-XiMat	blood
10	chr5:108497200-108498400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr5:108497400-108498400	Enhancers	HMEC	breast
12	chr5:108497400-108498400	Enhancers	Osteobl	bone
13	chr5:108497400-108498800	Enhancers	NHDF-Ad	bronchial
14	chr5:108497400-108499200	Enhancers	HSMM	muscle
15	chr5:108497600-108498000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr5:108497600-108498200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:108497600-108498400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:108497600-108508800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:108497800-108517400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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