Variant report

Variant	rs72798574
Chromosome Location	chr5:108504056-108504057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10035284	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10036203	0.83[ASN][1000 genomes]
rs10040665	0.82[ASN][1000 genomes]
rs10051034	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10055161	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10063768	0.83[ASN][1000 genomes]
rs10066375	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10067445	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10069467	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074150	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10074425	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10076453	0.83[ASN][1000 genomes]
rs10080132	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10213898	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10214383	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10214384	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1036214	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10477438	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10477439	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10477951	0.91[ASN][1000 genomes]
rs10477955	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11746231	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11749629	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11750370	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11952637	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11957989	0.91[ASN][1000 genomes]
rs17161612	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17407717	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17450490	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28759518	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3797843	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3797845	0.81[ASN][1000 genomes]
rs3814065	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4130644	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4957568	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4957569	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4957797	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55699307	0.87[ASN][1000 genomes]
rs6861626	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6869357	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6873546	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6882003	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6882531	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6883750	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6894117	0.89[ASN][1000 genomes]
rs6896724	0.83[ASN][1000 genomes]
rs72796593	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72796595	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72796596	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72798576	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7731193	0.83[ASN][1000 genomes]
rs7736773	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9326763	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9326764	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv2756048	chr5:108448101-108542101	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108468800-108521800	Weak transcription	Aorta	Aorta
2	chr5:108476000-108519200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:108476200-108506800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:108481600-108535000	Weak transcription	Left Ventricle	heart
5	chr5:108495200-108506200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:108496000-108532800	Weak transcription	Ovary	ovary
7	chr5:108497600-108508800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:108497800-108517400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:108498800-108512600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:108499000-108513200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:108500200-108527000	Weak transcription	HSMMtube	muscle
12	chr5:108501000-108521800	Weak transcription	Primary T cells from cord blood	blood
13	chr5:108502200-108522200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:108503200-108526800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:108503400-108504200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr5:108503400-108504600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr5:108503400-108504800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr5:108503400-108507200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr5:108503600-108504600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:108503600-108504600	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr5:108503600-108504800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr5:108503600-108526200	Weak transcription	Fetal Heart	heart
23	chr5:108503600-108540400	Weak transcription	Psoas Muscle	Psoas
24	chr5:108503800-108504800	Enhancers	HepG2	liver
25	chr5:108504000-108504200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:108504000-108504200	Enhancers	H9 Cell Line	embryonic stem cell
27	chr5:108504000-108504600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:108504000-108504600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr5:108504000-108504800	Enhancers	HUES6 Cell Line	embryonic stem cell

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