Variant report

Variant	rs11750751
Chromosome Location	chr5:116822984-116822985
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:116821234..116823544-chr5:116829349..116832247,2	MCF-7	breast:
2	chr5:116693270..116694072-chr5:116822684..116823457,3	MCF-7	breast:
3	chr5:116822600..116823429-chr5:117474971..117475497,2	MCF-7	breast:
4	chr5:116818267..116820596-chr5:116820773..116823516,3	MCF-7	breast:
5	chr5:116822706..116823238-chr5:118110990..118112031,3	MCF-7	breast:
6	chr5:116822477..116823522-chr5:117345341..117346321,14	MCF-7	breast:
7	chr5:116798602..116800963-chr5:116821842..116823358,2	MCF-7	breast:
8	chr5:116822579..116823522-chr5:117345341..117346279,5	MCF-7	breast:
9	chr5:116693270..116694072-chr5:116822684..116823457,2	MCF-7	breast:
10	chr5:116822796..116823373-chr5:117345646..117346259,4	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11741845	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17141806	0.82[CHB][hapmap]
rs2560518	0.85[CHB][hapmap]
rs2624569	0.85[CHB][hapmap];0.95[CHD][hapmap]
rs62380101	0.86[ASN][1000 genomes]
rs6886520	1.00[CHB][hapmap]
rs7726548	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882756	chr5:116783660-116905052	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv882757	chr5:116810010-117042759	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116822000-116823200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:116822000-116823200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr5:116822600-116823200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:116822600-116823200	Enhancers	NHDF-Ad	bronchial
5	chr5:116822800-116823400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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