Variant report

Variant	rs1175117
Chromosome Location	chr1:192203247-192203248
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1175115	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1175118	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1175120	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1175125	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1175130	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1175131	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1175133	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1175157	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11802527	0.81[EUR][1000 genomes]
rs12564406	0.84[EUR][1000 genomes]
rs12566011	0.84[EUR][1000 genomes]
rs1339130	0.82[ASN][1000 genomes]
rs2153214	0.87[ASN][1000 genomes]
rs6428092	0.87[ASN][1000 genomes]
rs7545041	0.81[EUR][1000 genomes]
rs7545796	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430047	chr1:191811587-192203678	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192202400-192203400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links