Variant report

Variant	rs2153214
Chromosome Location	chr1:192232099-192232100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10157255	0.93[CHB][hapmap]
rs10494672	0.93[CHB][hapmap]
rs10801110	0.81[ASN][1000 genomes]
rs1124172	0.93[CHB][hapmap]
rs1175115	0.88[ASN][1000 genomes]
rs1175117	0.87[ASN][1000 genomes]
rs1175118	0.87[ASN][1000 genomes]
rs1175120	0.84[ASN][1000 genomes]
rs1175125	0.87[ASN][1000 genomes]
rs1175130	0.87[ASN][1000 genomes]
rs1175131	0.87[ASN][1000 genomes]
rs1175133	0.85[ASN][1000 genomes]
rs1175142	1.00[CHB][hapmap]
rs1175145	0.93[CHB][hapmap]
rs1175147	0.93[CHB][hapmap]
rs1175157	0.90[ASN][1000 genomes]
rs12124127	0.93[CHB][hapmap]
rs12561839	1.00[JPT][hapmap]
rs12564406	1.00[CHB][hapmap]
rs12566011	1.00[CHB][hapmap]
rs1339129	0.93[CHB][hapmap]
rs1339130	1.00[CHB][hapmap]
rs1339131	0.93[CHB][hapmap]
rs1339132	1.00[CHB][hapmap]
rs1416500	1.00[CHB][hapmap]
rs1538487	0.83[ASN][1000 genomes]
rs1572729	0.93[CHB][hapmap]
rs16834183	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16834191	1.00[JPT][hapmap]
rs1934087	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2211111	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6428092	0.83[ASN][1000 genomes]
rs6428094	0.93[CHB][hapmap]
rs6428095	0.93[CHB][hapmap]
rs6659110	0.92[CHB][hapmap]
rs6659966	1.00[CHB][hapmap]
rs6663865	0.93[CHB][hapmap]
rs6684918	1.00[CHB][hapmap]
rs7532216	0.93[CHB][hapmap]
rs7544311	0.93[CHB][hapmap]
rs7545041	1.00[CHB][hapmap]
rs7545796	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs7554535	0.93[CHB][hapmap]
rs946421	0.93[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548649	chr1:192215064-192378979	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv872829	chr1:192230089-192370110	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192226000-192235800	Weak transcription	K562	blood
2	chr1:192229600-192232600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:192229600-192232800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:192230200-192235000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:192230800-192232400	Weak transcription	HUVEC	blood vessel
6	chr1:192231000-192235200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:192231200-192232400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:192231200-192232400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:192232000-192233400	Enhancers	HSMM	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links