Variant report

Variant	rs1538487
Chromosome Location	chr1:192280743-192280744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:191962436..191963394-chr1:192279940..192280907,5	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10157255	0.91[CHB][hapmap]
rs10494672	0.91[CHB][hapmap]
rs10801110	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1124172	0.91[CHB][hapmap]
rs1175115	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1175118	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1175120	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1175125	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1175130	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1175131	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1175133	0.83[EUR][1000 genomes]
rs1175142	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1175145	0.91[CHB][hapmap]
rs1175147	0.91[CHB][hapmap]
rs1175157	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11802527	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12074962	0.83[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs12087502	0.81[CEU][hapmap]
rs12087641	0.81[CEU][hapmap]
rs12124127	0.91[CHB][hapmap]
rs12564406	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12566011	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1339129	0.91[CHB][hapmap]
rs1339130	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1339131	0.91[CHB][hapmap]
rs1339132	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1343944	0.83[CEU][hapmap]
rs1416500	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1572729	0.91[CHB][hapmap]
rs17414071	0.82[CEU][hapmap]
rs1934087	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2153214	0.83[ASN][1000 genomes]
rs2211111	1.00[CHB][hapmap]
rs6428092	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6428094	0.91[CHB][hapmap]
rs6428095	0.91[CHB][hapmap]
rs6659110	0.91[CHB][hapmap]
rs6659966	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6663865	0.91[CHB][hapmap]
rs6684918	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs7512102	0.83[CEU][hapmap]
rs7514892	0.83[CEU][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes]
rs7532216	0.91[CHB][hapmap]
rs7534108	0.87[CEU][hapmap]
rs7544311	0.91[CHB][hapmap]
rs7545041	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7545796	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7554535	0.91[CHB][hapmap]
rs7555127	0.84[EUR][1000 genomes]
rs946421	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548649	chr1:192215064-192378979	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv872829	chr1:192230089-192370110	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv872830	chr1:192236376-192353005	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv548650	chr1:192246590-192324175	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv548651	chr1:192249116-192324175	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv548652	chr1:192249116-192353005	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv548653	chr1:192249116-192370110	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv548654	chr1:192249116-192373779	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv548655	chr1:192259645-192372674	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192280200-192280800	Enhancers	Dnd41	blood

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