Variant report

Variant	rs11751192
Chromosome Location	chr6:36235310-36235311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3AK20	chr6:36234545-36235361	MCF-7	breast:	n/a	n/a
2	POLR2A	chr6:36235204-36235316	MCF-7	breast:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36234338..36236115-chr6:36258063..36260027,2	MCF-7	breast:
2	chr6:36233787..36237183-chr6:36237790..36240340,3	MCF-7	breast:
3	chr6:36163567..36166266-chr6:36233925..36235533,2	MCF-7	breast:
4	chr6:36233046..36235503-chr6:36328347..36330699,2	MCF-7	breast:
5	chr6:36225540..36227041-chr6:36234182..36236117,2	K562	blood:
6	chr6:36235219..36237703-chr6:36238762..36240524,2	K562	blood:
7	chr6:36234014..36236349-chr6:36280863..36282685,2	K562	blood:
8	chr6:36201960..36204325-chr6:36233280..36235453,2	K562	blood:
9	chr6:36225141..36229306-chr6:36232137..36236689,5	K562	blood:

No data

No data

No data

Variant related genes	Relation type
PNPLA1	TF binding region
ENSG00000246982	Chromatin interaction
ENSG00000096070	Chromatin interaction
ENSG00000180316	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11758287	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2157316	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35020151	0.84[AMR][1000 genomes]
rs9470240	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428481	chr6:36219000-36365746	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36232000-36236200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:36232000-36237200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:36234400-36235400	Enhancers	HUVEC	blood vessel
4	chr6:36234400-36237000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:36234600-36237000	Enhancers	Hela-S3	cervix
6	chr6:36234600-36237600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:36234800-36236000	Weak transcription	Fetal Intestine Small	intestine
8	chr6:36234800-36237600	Enhancers	NHEK	skin
9	chr6:36235000-36235800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:36235000-36235800	Enhancers	Placenta Amnion	Placenta Amnion
11	chr6:36235000-36236600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:36235000-36237000	Enhancers	HMEC	breast
13	chr6:36235000-36237600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:36235000-36238200	Enhancers	Placenta	Placenta
15	chr6:36235200-36235400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr6:36235200-36237200	Enhancers	Brain Anterior Caudate	brain
17	chr6:36235200-36238600	Enhancers	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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