Variant report

Variant	rs2157316
Chromosome Location	chr6:36246308-36246309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11751192	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11758287	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35020151	0.84[AMR][1000 genomes]
rs9470240	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428481	chr6:36219000-36365746	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36239800-36246800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:36244600-36246400	Enhancers	Fetal Intestine Small	intestine
3	chr6:36245000-36246400	Enhancers	Fetal Intestine Large	intestine
4	chr6:36245600-36246600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:36245600-36249600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:36245800-36247200	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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