Variant report

Variant	rs11751310
Chromosome Location	chr6:36897630-36897631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36897578..36900278-chr6:36906376..36909115,2	K562	blood:
2	chr6:36895700..36898695-chr6:36952994..36954774,2	MCF-7	breast:
3	chr6:36890243..36895519-chr6:36897368..36902270,7	K562	blood:
4	chr6:36876919..36878918-chr6:36895703..36897672,2	K562	blood:
5	chr6:36884977..36888283-chr6:36895013..36898238,3	K562	blood:
6	chr6:36896194..36898898-chr6:36953631..36956084,2	K562	blood:
7	chr6:36897578..36900528-chr6:36906376..36908738,2	K562	blood:

Variant related genes	Relation type
ENSG00000137409	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11542163	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751956	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753183	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11753835	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11757851	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11759158	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11759163	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12660916	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12660989	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13191679	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13192293	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200132	1.00[ASN][1000 genomes]
rs13205108	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13205292	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206310	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13207209	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13210299	1.00[ASN][1000 genomes]
rs17552005	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34405617	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34433592	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34510528	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34597881	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34869908	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34913693	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35819257	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36098393	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71569352	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71569356	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470425	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11751310	C6orf89	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36880600-36900000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:36884800-36901200	Weak transcription	HMEC	breast
3	chr6:36891600-36901800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:36891800-36897800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr6:36892200-36900600	Weak transcription	HUVEC	blood vessel
6	chr6:36892600-36900800	Weak transcription	NHEK	skin
7	chr6:36892800-36915600	Weak transcription	Pancreas	Pancrea
8	chr6:36893200-36898000	Weak transcription	Esophagus	oesophagus
9	chr6:36893200-36900600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:36893400-36897800	Weak transcription	Brain Angular Gyrus	brain
11	chr6:36893600-36906600	Weak transcription	Thymus	Thymus
12	chr6:36893800-36898000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:36893800-36898400	Weak transcription	Liver	Liver
14	chr6:36893800-36898600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr6:36893800-36903800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:36894000-36898400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr6:36894000-36898600	Weak transcription	Fetal Brain Female	brain
18	chr6:36894000-36901200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:36894400-36898800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:36894400-36899200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:36894600-36898200	Enhancers	Adipose Nuclei	Adipose
22	chr6:36894600-36898200	Enhancers	HSMM	muscle
23	chr6:36894600-36898200	Enhancers	NHDF-Ad	bronchial
24	chr6:36894600-36898800	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:36894600-36898800	Enhancers	Ovary	ovary
26	chr6:36894800-36898600	Enhancers	Fetal Muscle Leg	muscle
27	chr6:36894800-36901000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:36895000-36897800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:36895000-36898000	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr6:36895000-36898800	Enhancers	Fetal Heart	heart
31	chr6:36895400-36898600	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr6:36895400-36899600	Weak transcription	Brain Germinal Matrix	brain
33	chr6:36895600-36898600	Enhancers	Right Atrium	heart
34	chr6:36895800-36899800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:36896000-36897800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:36896200-36900200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr6:36896200-36914200	Weak transcription	Primary T cells from cord blood	blood
38	chr6:36896200-36915400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr6:36896400-36898000	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr6:36896400-36899000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:36896400-36914200	Weak transcription	Brain Substantia Nigra	brain
42	chr6:36896600-36898200	Enhancers	HSMMtube	muscle
43	chr6:36896600-36898400	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr6:36896600-36898600	Enhancers	NHLF	lung
45	chr6:36896600-36899800	Weak transcription	Placenta	Placenta
46	chr6:36896600-36901400	Weak transcription	Fetal Thymus	thymus
47	chr6:36896800-36897800	Enhancers	Hela-S3	cervix
48	chr6:36897000-36898000	Enhancers	Osteobl	bone
49	chr6:36897000-36898600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr6:36897000-36898800	Enhancers	Skeletal Muscle Male	skeletal muscle

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