Variant report

Variant	rs11753183
Chromosome Location	chr6:36903800-36903801
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36902426..36903940-chr6:36907549..36909378,2	K562	blood:
2	chr6:36903375..36906327-chr6:36934903..36936989,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10947649	1.00[CEU][hapmap]
rs11542163	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11751310	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11751956	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11753835	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757851	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759158	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759163	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12660916	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12660989	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs13191679	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13192293	1.00[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13205108	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205292	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs13206310	0.81[EUR][1000 genomes]
rs13207209	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs13219894	0.80[CEU][hapmap]
rs13219913	0.80[CEU][hapmap]
rs17552005	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs34405617	0.84[EUR][1000 genomes]
rs34433592	0.81[EUR][1000 genomes]
rs34510528	0.81[EUR][1000 genomes]
rs34597881	0.81[EUR][1000 genomes]
rs34869908	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35819257	0.94[EUR][1000 genomes]
rs36098393	0.92[EUR][1000 genomes]
rs71569352	0.81[EUR][1000 genomes]
rs71569356	0.84[EUR][1000 genomes]
rs9470425	1.00[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11753183	C6orf89	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36892800-36915600	Weak transcription	Pancreas	Pancrea
2	chr6:36893600-36906600	Weak transcription	Thymus	Thymus
3	chr6:36893800-36903800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:36896200-36914200	Weak transcription	Primary T cells from cord blood	blood
5	chr6:36896200-36915400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:36896400-36914200	Weak transcription	Brain Substantia Nigra	brain
7	chr6:36897200-36907200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:36898600-36922200	Weak transcription	Right Atrium	heart
9	chr6:36898800-36906200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:36898800-36906400	Weak transcription	Left Ventricle	heart
11	chr6:36901600-36904000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:36901600-36906200	Enhancers	Hela-S3	cervix
13	chr6:36901600-36906200	Weak transcription	HMEC	breast
14	chr6:36901600-36906400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:36901800-36905200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:36901800-36905800	Weak transcription	NHLF	lung
17	chr6:36901800-36906000	Weak transcription	Osteobl	bone
18	chr6:36902000-36906400	Weak transcription	NHDF-Ad	bronchial
19	chr6:36902200-36906200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:36902200-36906600	Weak transcription	Fetal Thymus	thymus
21	chr6:36902800-36906200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:36903200-36904000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:36903200-36906000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:36903200-36906200	Weak transcription	NHEK	skin
25	chr6:36903400-36904000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:36903600-36904000	Enhancers	Fetal Stomach	stomach
27	chr6:36903800-36904000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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