Variant report

Variant	rs1175139
Chromosome Location	chr1:192221363-192221364
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10157255	0.92[CEU][hapmap]
rs10494672	0.96[CEU][hapmap];0.86[ASN][1000 genomes]
rs10801111	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10921129	0.87[EUR][1000 genomes]
rs10921133	0.85[CEU][hapmap]
rs1124172	0.96[CEU][hapmap]
rs1175121	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1175123	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1175126	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1175145	0.96[CEU][hapmap]
rs1175147	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1175148	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1175152	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1175154	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1175155	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1175156	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1175158	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12124127	0.96[CEU][hapmap]
rs12567011	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1339129	0.96[CEU][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1339131	0.96[CEU][hapmap]
rs1572729	0.96[CEU][hapmap]
rs17413409	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1892146	0.89[CEU][hapmap]
rs2249061	0.86[AMR][1000 genomes]
rs2249062	0.89[AMR][1000 genomes]
rs2369658	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6428094	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs6428095	0.96[CEU][hapmap]
rs6659110	0.91[CEU][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6663865	0.96[CEU][hapmap]
rs72732935	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7519610	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7528947	0.88[CEU][hapmap]
rs7532216	0.96[CEU][hapmap];0.86[ASN][1000 genomes]
rs7538387	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7544311	0.96[CEU][hapmap];0.86[ASN][1000 genomes]
rs7554467	0.86[ASN][1000 genomes]
rs7554535	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs946421	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548649	chr1:192215064-192378979	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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