Variant report

Variant	rs11751562
Chromosome Location	chr6:149080301-149080302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149067418..149069443-chr6:149078834..149081476,2	K562	blood:
2	chr6:149067051..149069749-chr6:149079749..149082404,2	MCF-7	breast:
3	chr6:149077591..149079962-chr6:149080201..149083752,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111962	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11754241	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11757768	1.00[ASW][hapmap];0.84[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.87[JPT][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17079191	0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs4897045	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4897046	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs60255537	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6908824	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9498147	0.81[CEU][hapmap];1.00[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11751562	UST	cis	cerebellum	SCAN

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149070000-149081400	Weak transcription	Stomach Mucosa	stomach
2	chr6:149070000-149087400	Weak transcription	Gastric	stomach
3	chr6:149070200-149081200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:149070200-149082000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:149070600-149081000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:149070800-149081200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:149070800-149081200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:149070800-149081400	Weak transcription	Aorta	Aorta
9	chr6:149072200-149081000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:149072600-149081400	Weak transcription	Left Ventricle	heart
11	chr6:149072600-149081800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:149072800-149081000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:149076400-149081600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:149077400-149081400	Enhancers	Primary B cells from peripheral blood	blood
15	chr6:149077800-149080400	Enhancers	Brain Angular Gyrus	brain
16	chr6:149077800-149081200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:149078000-149080400	ZNF genes & repeats	GM12878-XiMat	blood
18	chr6:149078000-149084400	Enhancers	Fetal Brain Male	brain
19	chr6:149078200-149081400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:149078400-149081200	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:149078400-149081400	Weak transcription	Pancreas	Pancrea
22	chr6:149078400-149081400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:149078800-149081800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:149078800-149083400	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr6:149079000-149081200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr6:149079000-149082000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr6:149079200-149080400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr6:149079200-149080400	Enhancers	Brain Hippocampus Middle	brain
29	chr6:149079200-149080400	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr6:149079200-149080600	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr6:149079200-149080600	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr6:149079200-149081200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:149079200-149081200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:149079200-149081400	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr6:149079200-149081400	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr6:149079200-149081600	Enhancers	Primary T cells from cord blood	blood
37	chr6:149079200-149083400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:149079400-149080400	Flanking Active TSS	Dnd41	blood
39	chr6:149079400-149081200	Weak transcription	Osteobl	bone
40	chr6:149079400-149084200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr6:149079600-149080400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
42	chr6:149079600-149080400	Enhancers	Duodenum Mucosa	Duodenum
43	chr6:149079600-149080400	Enhancers	Spleen	Spleen
44	chr6:149079600-149080600	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr6:149079600-149080600	Enhancers	Rectal Smooth Muscle	rectum
46	chr6:149079600-149081400	Enhancers	Primary T cells fromperipheralblood	blood
47	chr6:149079600-149082000	Enhancers	Fetal Thymus	thymus
48	chr6:149079600-149082000	Enhancers	Thymus	Thymus
49	chr6:149079800-149080400	Bivalent Enhancer	Liver	Liver
50	chr6:149079800-149080400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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