Variant report

Variant	rs11757768
Chromosome Location	chr6:149079394-149079395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149067418..149069443-chr6:149078834..149081476,2	K562	blood:
2	chr6:149077591..149079962-chr6:149080201..149083752,3	MCF-7	breast:
3	chr6:149078502..149080172-chr6:149081575..149083323,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111962	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11751562	1.00[ASW][hapmap];0.84[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.87[JPT][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11754241	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17079191	0.91[CHB][hapmap]
rs4897045	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4897046	0.83[AFR][1000 genomes]
rs60255537	0.83[AFR][1000 genomes]
rs6908824	0.81[AMR][1000 genomes]
rs9485326	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9498147	0.81[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];0.85[JPT][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11757768	UST	cis	cerebellum	SCAN

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149070000-149081400	Weak transcription	Stomach Mucosa	stomach
2	chr6:149070000-149087400	Weak transcription	Gastric	stomach
3	chr6:149070200-149081200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:149070200-149082000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:149070400-149079600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:149070600-149081000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:149070800-149081200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:149070800-149081200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:149070800-149081400	Weak transcription	Aorta	Aorta
10	chr6:149071200-149079400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:149072200-149079600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:149072200-149081000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:149072600-149079600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:149072600-149079600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:149072600-149079600	Weak transcription	Esophagus	oesophagus
16	chr6:149072600-149079800	Weak transcription	Lung	lung
17	chr6:149072600-149081400	Weak transcription	Left Ventricle	heart
18	chr6:149072600-149081800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:149072800-149079600	Weak transcription	Fetal Stomach	stomach
20	chr6:149072800-149081000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:149076400-149081600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:149076600-149079400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr6:149077400-149081400	Enhancers	Primary B cells from peripheral blood	blood
24	chr6:149077800-149080400	Enhancers	Brain Angular Gyrus	brain
25	chr6:149077800-149081200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:149078000-149079600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:149078000-149079600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:149078000-149080400	ZNF genes & repeats	GM12878-XiMat	blood
29	chr6:149078000-149084400	Enhancers	Fetal Brain Male	brain
30	chr6:149078200-149079400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr6:149078200-149079400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:149078200-149079600	Weak transcription	Brain Anterior Caudate	brain
33	chr6:149078200-149079800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:149078200-149080200	Enhancers	Fetal Brain Female	brain
35	chr6:149078200-149081400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr6:149078400-149079400	Enhancers	Primary B cells from cord blood	blood
37	chr6:149078400-149079600	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr6:149078400-149079600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr6:149078400-149081200	Weak transcription	Colon Smooth Muscle	Colon
40	chr6:149078400-149081400	Weak transcription	Pancreas	Pancrea
41	chr6:149078400-149081400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr6:149078600-149079400	Enhancers	Osteobl	bone
43	chr6:149078800-149079400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:149078800-149079600	Enhancers	Primary hematopoietic stem cells	blood
45	chr6:149078800-149079800	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr6:149078800-149081800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:149078800-149083400	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr6:149079000-149079400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:149079000-149079400	Enhancers	Dnd41	blood
50	chr6:149079000-149079600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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