Variant report
| Variant | rs1175175 |
|---|---|
| Chromosome Location | chr1:192170873-192170874 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:192158986..192162918-chr1:192169474..192172246,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10801098 | 0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10921104 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10921134 | 0.81[CEU][hapmap] |
| rs1175174 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1175177 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12141770 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12564406 | 0.81[CEU][hapmap] |
| rs12566011 | 0.81[CEU][hapmap] |
| rs1343944 | 0.81[CEU][hapmap] |
| rs16834097 | 0.91[ASN][1000 genomes] |
| rs17414071 | 0.81[CEU][hapmap] |
| rs1892145 | 0.81[CEU][hapmap] |
| rs1892147 | 0.81[CEU][hapmap] |
| rs1937236 | 0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2247352 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2247482 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4077238 | 0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4276895 | 0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4276896 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4329489 | 0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4454527 | 0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6684918 | 0.81[CEU][hapmap] |
| rs6690728 | 0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7512102 | 0.81[CEU][hapmap] |
| rs7518835 | 0.81[CEU][hapmap] |
| rs9660001 | 0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430047 | chr1:191811587-192203678 | Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:192170000-192171400 | ZNF genes & repeats | Dnd41 | blood |
| 2 | chr1:192170400-192171000 | ZNF genes & repeats | Monocytes-CD14+_RO01746 | blood |
