Variant report

Variant	rs16834097
Chromosome Location	chr1:192137858-192137859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10801098	0.85[ASN][1000 genomes]
rs10921104	0.91[ASN][1000 genomes]
rs1175174	0.91[ASN][1000 genomes]
rs1175175	0.91[ASN][1000 genomes]
rs1175177	0.91[ASN][1000 genomes]
rs12141770	0.91[ASN][1000 genomes]
rs12410956	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1937236	0.89[ASN][1000 genomes]
rs2247352	0.91[ASN][1000 genomes]
rs2247482	0.91[ASN][1000 genomes]
rs4077238	0.86[ASN][1000 genomes]
rs4276895	0.87[ASN][1000 genomes]
rs4276896	0.87[ASN][1000 genomes]
rs4329489	0.88[ASN][1000 genomes]
rs4454527	0.88[ASN][1000 genomes]
rs6690728	0.86[ASN][1000 genomes]
rs9660001	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007060	chr1:191577303-192141825	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv430047	chr1:191811587-192203678	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3400877	chr1:192137773-192138558	Weak transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases
4	esv3320999	chr1:192137810-192138545	Enhancers Weak transcription Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv3320998	chr1:192137857-192138505	Enhancers Weak transcription Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv3321000	chr1:192137857-192138505	Enhancers Weak transcription Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192135200-192141400	Enhancers	Dnd41	blood
2	chr1:192135200-192141800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:192135800-192139200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:192136000-192139200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr1:192136200-192138400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:192136200-192141600	Enhancers	Primary hematopoietic stem cells	blood
7	chr1:192136400-192138200	Genic enhancers	Primary monocytes fromperipheralblood	blood
8	chr1:192137000-192139200	Enhancers	HUVEC	blood vessel
9	chr1:192137400-192139200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:192137400-192139200	Weak transcription	Fetal Thymus	thymus
11	chr1:192137600-192139400	Weak transcription	Primary T cells from cord blood	blood
12	chr1:192137800-192138800	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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