Variant report

Variant	rs11752086
Chromosome Location	chr6:145630852-145630853
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11753411	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11754551	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs552965	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs571192	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs576870	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9386110	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11752086	UST	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145626600-145635200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:145629400-145632600	Weak transcription	Fetal Heart	heart
3	chr6:145630000-145632200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:145630400-145632000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:145630400-145632000	Enhancers	NHDF-Ad	bronchial
6	chr6:145630400-145632200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:145630400-145632800	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr6:145630600-145631600	Enhancers	Hela-S3	cervix
9	chr6:145630600-145632200	Enhancers	Brain Germinal Matrix	brain
10	chr6:145630600-145632600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:145630600-145634200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:145630800-145631000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:145630800-145631200	Enhancers	Fetal Kidney	kidney
14	chr6:145630800-145633000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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