Variant report

Variant	rs11752280
Chromosome Location	chr6:29456655-29456656
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF274	chr6:29456608-29456979	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:29456611-29456661	HCM	heart:	n/a
2	chr6:29456611-29456661	A549	lung:	n/a
3	chr6:29456611-29456661	HCT-116	colon:	n/a
4	chr6:29456611-29456661	PFSK-1	brain:	n/a
5	chr6:29456611-29456661	Hela-S3	cervix:	n/a
6	chr6:29456611-29456661	AG09319	gingival:	n/a
7	chr6:29456611-29456661	CMK	blood:	n/a
8	chr6:29456611-29456661	GM12892	blood:	n/a
9	chr6:29456611-29456661	BE2_C	brain:	n/a
10	chr6:29456611-29456661	HRPEpiC	eye:	n/a
11	chr6:29456611-29456661	HPAEpiC	pulmonary alveolar:	n/a
12	chr6:29456611-29456661	SK-N-SH	brain:	n/a
13	chr6:29456611-29456661	HL-60	blood:	n/a
14	chr6:29456611-29456661	HNPCEpiC	eye:	n/a
15	chr6:29456611-29456661	NHBE	bronchial:	n/a
16	chr6:29456611-29456661	AG04449	skin:	fetal
17	chr6:29456611-29456661	HEEpiC	esophagus:	n/a
18	chr6:29456611-29456661	NB4	blood:	n/a
19	chr6:29456611-29456661	HEK293	kidney:	embryo
20	chr6:29456611-29456661	GM12878	blood:	n/a
21	chr6:29456611-29456661	HepG2	liver:	n/a
22	chr6:29456611-29456661	ProgFib	skin:	n/a
23	chr6:29456611-29456661	HRE	kidney:	n/a
24	chr6:29456611-29456661	IMR90	lung:	fetal
25	chr6:29456611-29456661	T-47D	breast:	n/a
26	chr6:29456611-29456661	SK-N-SH_RA	brain:	n/a
27	chr6:29456611-29456661	HIPEpiC	eye:	n/a
28	chr6:29456611-29456661	AoSMC	blood vessel:	n/a
29	chr6:29456611-29456661	Hepatocyte	liver:	n/a
30	chr6:29456611-29456661	MCF10A-Er-Src	breast:	n/a
31	chr6:29456611-29456661	HAEpiC	amniotic membrane:	n/a
32	chr6:29456611-29456661	K562	blood:	n/a
33	chr6:29456611-29456661	HMEC	breast:	n/a
34	chr6:29456611-29456661	Jurkat	blood:	n/a
35	chr6:29456611-29456661	ovcar-3	ovarian:	n/a
36	chr6:29456611-29456661	GM06990	blood:	n/a
37	chr6:29456611-29456661	AG10803	skin:	n/a
38	chr6:29456611-29456661	U87	brain:	n/a
39	chr6:29456611-29456661	LNCaP	prostate:	n/a
40	chr6:29456611-29456661	HUVEC	blood vessel:	n/a
41	chr6:29456611-29456661	MCF-7	breast:	n/a
42	chr6:29456611-29456661	AG04450	lung:	fetal
43	chr6:29456611-29456661	H1-hESC	embryonic stem cell:	embryo
44	chr6:29456611-29456661	PANC-1	pancreas:	n/a
45	chr6:29456611-29456661	HCPEpiC	choroid plexus:	n/a
46	chr6:29456611-29456661	SAEC	small airway:	n/a
47	chr6:29456611-29456661	HCF	heart:	n/a
48	chr6:29456611-29456661	NT2-D1	testis:	n/a
49	chr6:29456611-29456661	AG09309	skin:	n/a
50	chr6:29456611-29456661	HRCEpiC	kidney:	n/a

No data

Variant related genes	Relation type
MAS1L	TF binding region
MAS1L	CpG island

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11756938	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3117438	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv883528	chr6:29447724-29494897	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv981125	chr6:29456623-29457966	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29452200-29457000	Weak transcription	Liver	Liver
2	chr6:29454800-29457800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:29455000-29457200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:29455400-29457200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:29455600-29457200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:29456000-29457800	Weak transcription	K562	blood

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