Variant report
| Variant | rs11752690 |
|---|---|
| Chromosome Location | chr6:29404409-29404410 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chr6:29404325-29404866 | SK-N-SH | brain: | n/a | n/a |
| 2 | MAFK | chr6:29404331-29404529 | HepG2 | liver: | n/a | n/a |
| 3 | RAD21 | chr6:29404404-29404838 | H1-hESC | embryonic stem cell: | n/a | chr6:29404686-29404698 |
| 4 | MAFK | chr6:29404332-29404569 | HepG2 | liver: | n/a | n/a |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| OR10C1 | TF binding region |
| OR5V1 | TF binding region |
| ENSG00000206474 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:5)
| rs_ID | r2[population] |
|---|---|
| rs11752013 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11756485 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11756628 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11758104 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35477150 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830624 | chr6:29274525-29445565 | Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
