Variant report

Variant	rs11758104
Chromosome Location	chr6:29457970-29457971
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11752013	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11752690	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11756485	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11756628	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35477150	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv883528	chr6:29447724-29494897	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29457200-29458000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:29457200-29459400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr6:29457200-29461200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:29457800-29458600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:29457800-29459800	Enhancers	Primary hematopoietic stem cells	blood
6	chr6:29457800-29459800	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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