Variant report

Variant	rs11753307
Chromosome Location	chr6:34113678-34113679
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34023393..34025806-chr6:34111046..34114201,3	MCF-7	breast:
2	chr6:34110331..34113788-chr6:34116260..34119382,3	MCF-7	breast:
3	chr6:33677651..33679939-chr6:34111673..34114600,2	MCF-7	breast:
4	chr6:34100230..34104042-chr6:34111323..34114936,4	K562	blood:
5	chr6:34023070..34025324-chr6:34112183..34113758,2	MCF-7	breast:
6	chr6:33678240..33679964-chr6:34113479..34115343,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124493	Chromatin interaction
ENSG00000137288	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2451332	0.83[ASN][1000 genomes]
rs6928019	0.82[EUR][1000 genomes]
rs9380409	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv432881	chr6:34026522-34213822	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv885780	chr6:34050917-34131376	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv462902	chr6:34056726-34195011	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv602862	chr6:34056726-34195011	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv885781	chr6:34110257-34247661	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	nsv462903	chr6:34110257-34263743	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
10	nsv602863	chr6:34110257-34263743	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
11	esv1816380	chr6:34110880-34206718	Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34110200-34114000	Bivalent Enhancer	Placenta	Placenta
2	chr6:34110400-34114000	Bivalent Enhancer	Fetal Thymus	thymus
3	chr6:34110800-34113800	Active TSS	H9 Cell Line	embryonic stem cell
4	chr6:34111200-34114000	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
5	chr6:34111400-34113800	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr6:34111400-34113800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:34111400-34113800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:34111400-34113800	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr6:34111600-34113800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:34111600-34113800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:34111600-34114000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:34111600-34114400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
13	chr6:34111800-34113800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:34111800-34113800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:34111800-34113800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
16	chr6:34111800-34113800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
17	chr6:34111800-34113800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:34111800-34114000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
19	chr6:34111800-34114000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:34111800-34114000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
21	chr6:34111800-34114000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
22	chr6:34111800-34114000	Bivalent Enhancer	Spleen	Spleen
23	chr6:34112000-34113800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
24	chr6:34112000-34113800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:34112000-34113800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:34112400-34113800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:34112600-34113800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
28	chr6:34112600-34113800	Bivalent Enhancer	Fetal Intestine Small	intestine
29	chr6:34112600-34113800	Flanking Active TSS	Right Ventricle	heart
30	chr6:34112800-34113800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr6:34112800-34113800	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:34113000-34113800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
33	chr6:34113000-34114000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:34113200-34113800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:34113200-34113800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
36	chr6:34113200-34113800	Active TSS	Primary T killer memory cells from peripheral blood	blood
37	chr6:34113200-34113800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:34113200-34113800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:34113200-34113800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
40	chr6:34113200-34113800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:34113200-34113800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
42	chr6:34113200-34113800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
43	chr6:34113200-34113800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr6:34113200-34114000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:34113200-34114000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
46	chr6:34113400-34113800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr6:34113400-34113800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
48	chr6:34113400-34113800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:34113400-34113800	Enhancers	Pancreas	Pancrea
50	chr6:34113400-34113800	Active TSS	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links