Variant report

Variant	rs6928019
Chromosome Location	chr6:34109404-34109405
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34096880..34099579-chr6:34108497..34110851,2	K562	blood:
2	chr6:34106807..34109627-chr6:34115783..34118454,2	K562	blood:
3	chr6:33956037..33957950-chr6:34107696..34110664,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11753307	0.82[EUR][1000 genomes]
rs12205473	0.84[ASN][1000 genomes]
rs12525536	0.82[ASN][1000 genomes]
rs2029457	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs2029459	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs2029460	0.85[EUR][1000 genomes]
rs2029461	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs2029462	0.89[EUR][1000 genomes]
rs2451337	0.85[ASN][1000 genomes]
rs2499728	0.81[ASN][1000 genomes]
rs2499729	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2499730	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2499732	0.92[CEU][hapmap];0.91[CHB][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4713739	0.83[ASN][1000 genomes]
rs4713741	0.84[ASN][1000 genomes]
rs4713742	0.85[ASN][1000 genomes]
rs4713743	0.85[ASN][1000 genomes]
rs9368794	0.82[ASN][1000 genomes]
rs9380409	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs9394188	0.88[ASN][1000 genomes]
rs9394189	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv432881	chr6:34026522-34213822	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv885780	chr6:34050917-34131376	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv462902	chr6:34056726-34195011	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv602862	chr6:34056726-34195011	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34101600-34110200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:34103800-34110400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr6:34104400-34111400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:34107000-34110000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:34107400-34109600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:34107600-34110000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:34107600-34110400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:34107600-34111400	Weak transcription	Right Atrium	heart
9	chr6:34108200-34110400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:34108400-34111400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
11	chr6:34108400-34111600	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr6:34108800-34110400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:34109000-34109800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:34109000-34110600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
15	chr6:34109400-34110400	Enhancers	H1 Cell Line	embryonic stem cell

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