Variant report

Variant	rs11753486
Chromosome Location	chr6:163681383-163681384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163680651..163683431-chr6:163686172..163688713,2	K562	blood:
2	chr6:163680711..163682973-chr6:163830679..163833543,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4709687	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62427989	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7760002	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9456849	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163680000-163681400	Enhancers	Brain Hippocampus Middle	brain
2	chr6:163680000-163683600	Enhancers	Brain Angular Gyrus	brain
3	chr6:163680000-163686600	Enhancers	Fetal Heart	heart
4	chr6:163680200-163682200	Flanking Active TSS	Brain Anterior Caudate	brain
5	chr6:163680400-163681600	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr6:163680400-163682200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
7	chr6:163680600-163682000	Flanking Active TSS	Brain Cingulate Gyrus	brain
8	chr6:163680600-163682800	Flanking Active TSS	Brain Germinal Matrix	brain
9	chr6:163680800-163681400	Enhancers	Placenta	Placenta
10	chr6:163680800-163681400	Enhancers	Lung	lung
11	chr6:163680800-163681600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:163680800-163681800	Enhancers	Spleen	Spleen
13	chr6:163680800-163682400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
14	chr6:163680800-163682600	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr6:163680800-163683600	Enhancers	Fetal Brain Male	brain
16	chr6:163681000-163681400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr6:163681000-163681400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr6:163681000-163681400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
19	chr6:163681000-163681400	Flanking Active TSS	Left Ventricle	heart
20	chr6:163681000-163681400	Enhancers	Pancreas	Pancrea
21	chr6:163681000-163681400	Flanking Active TSS	Right Atrium	heart
22	chr6:163681000-163681400	Flanking Active TSS	Right Ventricle	heart
23	chr6:163681000-163681600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr6:163681000-163681800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:163681000-163682000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:163681000-163682000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
27	chr6:163681000-163682000	Flanking Active TSS	Brain Substantia Nigra	brain
28	chr6:163681000-163682000	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr6:163681000-163682000	Flanking Active TSS	NH-A	brain
30	chr6:163681000-163682200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
31	chr6:163681000-163682200	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr6:163681000-163682200	Flanking Active TSS	Fetal Brain Female	brain
33	chr6:163681000-163682200	Enhancers	Fetal Thymus	thymus
34	chr6:163681200-163681400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
35	chr6:163681200-163681400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
36	chr6:163681200-163681400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:163681200-163681400	Enhancers	Primary B cells from cord blood	blood
38	chr6:163681200-163681400	Enhancers	Primary T cells from cord blood	blood
39	chr6:163681200-163681400	Enhancers	Primary hematopoietic stem cells	blood
40	chr6:163681200-163681400	Active TSS	Fetal Lung	lung
41	chr6:163681200-163681400	Flanking Active TSS	Fetal Muscle Trunk	muscle
42	chr6:163681200-163681400	Flanking Active TSS	Ovary	ovary
43	chr6:163681200-163681400	Flanking Active TSS	Psoas Muscle	Psoas
44	chr6:163681200-163681400	Bivalent Enhancer	Stomach Mucosa	stomach
45	chr6:163681200-163681600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:163681200-163681600	Enhancers	Primary B cells from peripheral blood	blood
47	chr6:163681200-163681600	Active TSS	Stomach Smooth Muscle	stomach
48	chr6:163681200-163681800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:163681200-163681800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
50	chr6:163681200-163681800	Enhancers	Cortex derived primary cultured neurospheres	brain

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