Variant report

Variant	rs4709687
Chromosome Location	chr6:163679947-163679948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL078585.1-10	chr6:163679364-163680545	refGeneNc_1043_NR_033862

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11753486	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62427989	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7760002	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9456849	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163671000-163680600	Weak transcription	Left Ventricle	heart
2	chr6:163671200-163680600	Weak transcription	Right Ventricle	heart
3	chr6:163673600-163681000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:163675600-163680800	Weak transcription	Adipose Nuclei	Adipose
5	chr6:163675800-163680000	Weak transcription	Fetal Heart	heart
6	chr6:163675800-163680600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:163675800-163680800	Weak transcription	Fetal Brain Male	brain
8	chr6:163675800-163681200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:163676000-163680600	Weak transcription	Right Atrium	heart
10	chr6:163676000-163681000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:163676200-163680000	Weak transcription	Brain Germinal Matrix	brain
12	chr6:163676400-163680600	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:163677800-163680200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:163678000-163680000	Weak transcription	Brain Angular Gyrus	brain
15	chr6:163678200-163680000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:163678200-163680000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:163678400-163680000	Weak transcription	Brain Anterior Caudate	brain
18	chr6:163678400-163680000	Weak transcription	Brain Hippocampus Middle	brain
19	chr6:163679800-163680200	Enhancers	Brain Substantia Nigra	brain
20	chr6:163679800-163680400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:163679800-163680800	Enhancers	Cortex derived primary cultured neurospheres	brain

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