Variant report

Variant	rs11754267
Chromosome Location	chr6:13748687-13748688
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13217918	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs365178	0.85[EUR][1000 genomes]
rs3857607	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4053006	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs411164	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566307	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749482	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749786	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9464241	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9464246	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1030774	chr6:13736025-13783733	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13747200-13748800	Enhancers	Primary T cells fromperipheralblood	blood
2	chr6:13747200-13748800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:13747200-13748800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr6:13747400-13748800	Enhancers	GM12878-XiMat	blood
5	chr6:13748000-13748800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:13748200-13749000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr6:13748400-13748800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:13748600-13748800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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