Variant report

Variant	rs411164
Chromosome Location	chr6:13749102-13749103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13709180..13711346-chr6:13748114..13750460,2	K562	blood:
2	chr6:13711887..13713957-chr6:13747635..13751147,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10484251	0.92[CHB][hapmap]
rs10948811	0.92[CHB][hapmap];0.80[JPT][hapmap]
rs11753232	0.92[CHB][hapmap]
rs11754267	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755634	0.92[CHB][hapmap];0.80[JPT][hapmap]
rs11759518	0.92[CHB][hapmap]
rs13217918	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1573702	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs17213683	0.83[CHB][hapmap]
rs2071836	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs2299026	0.91[CHB][hapmap]
rs2299027	0.92[CHB][hapmap]
rs365178	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3846912	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs3857607	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3906327	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs4053006	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4715512	0.92[CHB][hapmap]
rs566307	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6459020	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs6459025	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs6911121	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs7744218	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs7749482	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749786	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9464241	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9464246	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9475276	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1030774	chr6:13736025-13783733	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13748800-13749400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr6:13749000-13752000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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